If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ), 'gf_id' => 'HOM05D000813', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000813' ), 'data_identifier' => 'HOM05D000813', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000813', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36660' => 'bna', 'A03p32800' => 'bna', 'A03p35160' => 'bna', 'A05p44970' => 'bna', 'A06p09800' => 'bna', 'A06p39870' => 'bna', 'A07p29510' => 'bna', 'A07p31680' => 'bna', 'A07p35580' => 'bna', 'A07p40050' => 'bna', 'A09p04070' => 'bna', 'A09p62810' => 'bna', 'A10p28600' => 'bna', 'Aa31LG2G3880' => 'aar', 'Aa31LG2G7030' => 'aar', 'Aa31LG3G18500' => 'aar', 'Aa31LG3G6240' => 'aar', 'Aa31LG4G11650' => 'aar', 'Aa31LG4G4500' => 'aar', 'Aa31LG5G12670' => 'aar', 'Aa31LG5G17830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2393' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3043' => 'aag', 'Actinidia04819' => 'ach', 'Actinidia04820' => 'ach', 'Actinidia04821' => 'ach', 'Actinidia13964' => 'ach', 'Actinidia14172' => 'ach', 'Actinidia16132' => 'ach', 'Actinidia16160' => 'ach', 'Actinidia18987' => 'ach', 'Actinidia18988' => 'ach', 'Actinidia23398' => 'ach', 'Actinidia30044' => 'ach', 'Actinidia35039' => 'ach', 'Ah.01g009360' => 'amhyb', 'Ah.02g125780' => 'amhyb', 'Ah.03g138880' => 'amhyb', 'Ah.08g214670' => 'amhyb', 'Ah.11g047690' => 'amhyb', 'AL1G25530' => 'aly', 'AL2G28350' => 'aly', 'AL2G34090' => 'aly', 'AL3G11390' => 'aly', 'AL3G18550' => 'aly', 'AL5G19620' => 'aly', 'AL6G18380' => 'aly', 'AL759U10010' => 'aly', 'Aqoxy3G00530' => 'aox', 'Aqoxy3G03681' => 'aox', 'Aqoxy3G03682' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12DG6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FS3I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R75EY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32Y4H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7JNQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS3LRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA220I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NADZ26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7WG4W' => 'arhy', 'AT1G13740' => 'ath', 'AT1G69260' => 'ath', 'AT1G74210' => 'ath', 'AT3G02140' => 'ath', 'AT3G07255' => 'ath', 'AT3G29575' => 'ath', 'AT5G08030' => 'ath', 'ATR0177G011' => 'atr', 'ATR0177G048' => 'atr', 'ATR0177G049' => 'atr', 'ATR0177G055' => 'atr', 'ATR0561G189' => 'atr', 'Atru.chr11.1621' => 'acertr', 'Atru.chr8.426' => 'acertr', 'Atru.chr9.563' => 'acertr', 'AUR62000729' => 'cqu', 'AUR62001139' => 'cqu', 'AUR62003093' => 'cqu', 'AUR62007910' => 'cqu', 'AUR62007911' => 'cqu', 'AUR62008543' => 'cqu', 'AUR62008545' => 'cqu', 'AUR62016540' => 'cqu', 'AUR62021548' => 'cqu', 'AUR62021550' => 'cqu', 'BcaB02g06473' => 'bca', 'BcaB03g15463' => 'bca', 'BcaB03g15885' => 'bca', 'BcaB04g19513' => 'bca', 'BcaB04g21318' => 'bca', 'BcaB07g30077' => 'bca', 'BcaB08g34322' => 'bca', 'BcaB08g37296' => 'bca', 'BcaB08g37299' => 'bca', 'BcaC01g04467' => 'bca', 'BcaC01g04488' => 'bca', 'BcaC03g17582' => 'bca', 'BcaC04g23839' => 'bca', 'BcaC05g24570' => 'bca', 'BcaC05g24571' => 'bca', 'BcaC05g25282' => 'bca', 'BcaC05g30327' => 'bca', 'BcaC05g30390' => 'bca', 'BcaC06g30860' => 'bca', 'BcaC06g33694' => 'bca', 'BcaC07g41624' => 'bca', 'BcaC08g45601' => 'bca', 'BcaC08g45903' => 'bca', 'BcaC08g46376' => 'bca', 'BcaC08g46853' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00170' => 'bna', 'BolC1t05564H' => 'bol', 'BolC2t08456H' => 'bol', 'BolC2t11620H' => 'bol', 'BolC3t16256H' => 'bol', 'BolC3t16545H' => 'bol', 'BolC5t29906H' => 'bol', 'BolC5t35105H' => 'bol', 'BolC6t38464H' => 'bol', 'BolC6t38466H' => 'bol', 'BolC6t38468H' => 'bol', 'BolC6t38819H' => 'bol', 'BolC6t39366H' => 'bol', 'BolC6t39869H' => 'bol', 'BolC7t44351H' => 'bol', 'BolC8t52179H' => 'bol', 'BolC9t53360H' => 'bol', 'BolC9t59635H' => 'bol', 'BraA01t04391Z' => 'bra', 'BraA02t08661Z' => 'bra', 'BraA03t12449Z' => 'bra', 'BraA03t12695Z' => 'bra', 'BraA06t24170Z' => 'bra', 'BraA06t26901Z' => 'bra', 'BraA07t30589Z' => 'bra', 'BraA07t30590Z' => 'bra', 'BraA07t30794Z' => 'bra', 'BraA07t31146Z' => 'bra', 'BraA07t31549Z' => 'bra', 'BraA09t36044Z' => 'bra', 'BraA09t41643Z' => 'bra', 'BraA10t44909Z' => 'bra', 'BraSC197t45806Z' => 'bra', 'C02p23140' => 'bna', 'C02p55650' => 'bna', 'C03p39920' => 'bna', 'C03p42760' => 'bna', 'C05p11590' => 'bna', 'C06p33500' => 'bna', 'C06p33530' => 'bna', 'C06p33560' => 'bna', 'C06p37090' => 'bna', 'C06p40650' => 'bna', 'C06p48400' => 'bna', 'C07p38280' => 'bna', 'C08p46300' => 'bna', 'C09p04280' => 'bna', 'C09p68890' => 'bna', 'C09p75540' => 'bna', 'CAN.G10.17' => 'can', 'CAN.G1305.5' => 'can', 'CAN.G497.99' => 'can', 'CAN.G587.46' => 'can', 'CAN.G707.3' => 'can', 'CAN.G874.10' => 'can', 'CAN.G93.61' => 'can', 'CAN.G93.62' => 'can', 'CANSAT56G3611' => 'cansat', 'CANSAT64G0091' => 'cansat', 'CANSAT64G1597' => 'cansat', 'CANSAT80G0358' => 'cansat', 'CARHR014140' => 'chi', 'CARHR062150' => 'chi', 'CARHR067470' => 'chi', 'CARHR076110' => 'chi', 'CARHR081910' => 'chi', 'CARHR153100' => 'chi', 'CARHR205150' => 'chi', 'Carub.0001s1348' => 'cru', 'Carub.0002s1585' => 'cru', 'Carub.0002s2100' => 'cru', 'Carub.0003s0126' => 'cru', 'Carub.0003s0678' => 'cru', 'Carub.0005s0817' => 'cru', 'Carub.0006s0692' => 'cru', 'Ca_04361_v3' => 'car', 'Ca_04981_v3' => 'car', 'Ca_14359_v3' => 'car', 'Ca_21767_v3' => 'car', 'Ca_23223_v3' => 'car', 'Ca_30256_v3' => 'car', 'Cc00_g07650' => 'ccan', 'Cc01_g16640' => 'ccan', 'Cc03_g09430' => 'ccan', 'Cc07_g04270' => 'ccan', 'Cc11_g03870' => 'ccan', 'Cc11_g11930' => 'ccan', 'CDE02G1134' => 'cde', 'CDE04G1420' => 'cde', 'CDE04G2471' => 'cde', 'CDE04G3141' => 'cde', 'CDE06G1911' => 'cde', 'CDE07G1444' => 'cde', 'CDE09G0249' => 'cde', 'Cfa008875' => 'cfa', 'Cfa010414' => 'cfa', 'Cfa019343' => 'cfa', 'Ciclev10011883m.g' => 'ccl', 'Ciclev10019961m.g' => 'ccl', 'Ciclev10020540m.g' => 'ccl', 'Ciclev10021061m.g' => 'ccl', 'Ciclev10031813m.g' => 'ccl', 'CiPaw.03G088200' => 'cil', 'CiPaw.04G055300' => 'cil', 'CiPaw.05G124600' => 'cil', 'CiPaw.05G124700' => 'cil', 'CiPaw.11G054200' => 'cil', 'CiPaw.11G054300' => 'cil', 'CiPaw.12G008900' => 'cil', 'CiPaw.13G049300' => 'cil', 'CiPaw.14G039200' => 'cil', 'ClCG04G011760' => 'cla', 'ClCG04G011770' => 'cla', 'ClCG05G023690' => 'cla', 'ClCG07G002130' => 'cla', 'COL.COLO4_04939' => 'col', 'COL.COLO4_06850' => 'col', 'COL.COLO4_24345' => 'col', 'COL.COLO4_27876' => 'col', 'Cpa.g.c34984' => 'cpa', 'Cpa.g.c38432' => 'cpa', 'Cpa.g.c43137' => 'cpa', 'Cpa.g.sc1086.2' => 'cpa', 'Cpa.g.sc1086.3' => 'cpa', 'Cpa.g.sc14.182' => 'cpa', 'Cre03.g183650' => 'cre', 'Cre16.g683850' => 'cre', 'Cre16.g683900' => 'cre', 'Cre17.g699850' => 'cre', 'Cre17.g704150' => 'cre', 'CsaV3_1G006010' => 'csa', 'CsaV3_1G006020' => 'csa', 'CsaV3_3G030080' => 'csa', 'CsaV3_5G033350' => 'csa', 'CSS0001555' => 'camsi', 'CSS0004093' => 'camsi', 'CSS0005538' => 'camsi', 'CSS0009988' => 'camsi', 'CSS0011375' => 'camsi', 'CSS0012632' => 'camsi', 'CSS0018238' => 'camsi', 'CSS0048536' => 'camsi', 'DCAR_000519' => 'dca', 'DCAR_011039' => 'dca', 'DCAR_011566' => 'dca', 'DCAR_011567' => 'dca', 'DCAR_025435' => 'dca', 'DCAR_030044' => 'dca', 'Dinv05112' => 'din', 'Dinv06099' => 'din', 'Dinv12639' => 'din', 'Dinv16739' => 'din', 'Dinv17421' => 'din', 'Dinv17423' => 'din', 'Dinv22773' => 'din', 'Dinv22774' => 'din', 'Dinv33832' => 'din', 'Dinv34938' => 'din', 'Duzib068G0157' => 'dzi', 'Duzib068G0186' => 'dzi', 'Duzib084G0602' => 'dzi', 'Duzib138G1088' => 'dzi', 'Duzib147G1277' => 'dzi', 'Duzib187G1930' => 'dzi', 'Duzib205G0487' => 'dzi', 'Duzib211G0022' => 'dzi', 'Duzib264G0316' => 'dzi', 'Duzib268G0134' => 'dzi', 'ECA234G4698' => 'eca', 'ECA246G0136' => 'eca', 'ECA246G0356' => 'eca', 'ECA246G2964' => 'eca', 'ECA247G3175' => 'eca', 'EL10Ac5g11140' => 'bvu', 'EL10Ac5g11142' => 'bvu', 'EL10Ac6g15003' => 'bvu', 'EL10Ac7g17917' => 'bvu', 'Eucgr.B00600' => 'egr', 'Eucgr.B00602' => 'egr', 'Eucgr.B03147' => 'egr', 'Eucgr.G02444' => 'egr', 'Eucgr.G02445' => 'egr', 'Eucgr.H00766' => 'egr', 'FAN05G0037' => 'fan', 'FAN07G0278' => 'fan', 'FAN08G2806' => 'fan', 'FAN08G3285' => 'fan', 'FAN09G3399' => 'fan', 'FAN12G1977' => 'fan', 'FAN13G0676' => 'fan', 'FAN14G3582' => 'fan', 'FAN15G1048' => 'fan', 'FAN17G0028' => 'fan', 'FAN18G0473' => 'fan', 'FAN18G2171' => 'fan', 'FAN22G2094' => 'fan', 'FAN24G1439' => 'fan', 'FAN27G2809' => 'fan', 'FvH4_2g18440' => 'fve', 'FvH4_4g29910' => 'fve', 'FvH4_5g13760' => 'fve', 'FvH4_5g13770' => 'fve', 'FvH4_6g46820' => 'fve', 'Glyma.01G060300' => 'gma', 'Glyma.02G118500' => 'gma', 'Glyma.03G084300' => 'gma', 'Glyma.04G162100' => 'gma', 'Glyma.05G020400' => 'gma', 'Glyma.05G020500' => 'gma', 'Glyma.06G204100' => 'gma', 'Glyma.08G246400' => 'gma', 'Glyma.16G090500' => 'gma', 'Glyma.17G078900' => 'gma', 'Glyma.17G079000' => 'gma', 'Glyma.18G267200' => 'gma', 'Gohir.A07G068200' => 'ghi', 'Gohir.A07G198750' => 'ghi', 'Gohir.A09G009200' => 'ghi', 'Gohir.A11G140000' => 'ghi', 'Gohir.A12G160800' => 'ghi', 'Gohir.A12G183000' => 'ghi', 'Gohir.A13G082900' => 'ghi', 'Gohir.D07G072700' => 'ghi', 'Gohir.D07G205200' => 'ghi', 'Gohir.D09G008300' => 'ghi', 'Gohir.D11G146000' => 'ghi', 'Gohir.D12G164100' => 'ghi', 'Gohir.D12G186100' => 'ghi', 'Gohir.D13G082800' => 'ghi', 'Gorai.001G076900' => 'gra', 'Gorai.001G231200' => 'gra', 'Gorai.006G010000' => 'gra', 'Gorai.007G156700' => 'gra', 'Gorai.008G176700' => 'gra', 'Gorai.008G199500' => 'gra', 'Gorai.013G094600' => 'gra', 'GSVIVG01003927001' => 'vvi', 'GSVIVG01007848001' => 'vvi', 'GSVIVG01008104001' => 'vvi', 'GSVIVG01012225001' => 'vvi', 'HanXRQChr04g0119381' => 'han', 'HanXRQChr07g0193041' => 'han', 'HanXRQChr08g0230501' => 'han', 'HanXRQChr09g0272741' => 'han', 'HanXRQChr10g0279571' => 'han', 'HanXRQChr12g0375191' => 'han', 'HanXRQChr12g0377381' => 'han', 'HanXRQChr15g0488881' => 'han', 'HanXRQChr17g0550211' => 'han', 'HanXRQChr17g0552721' => 'han', 'Haze_03362' => 'cav', 'Haze_07735' => 'cav', 'Haze_11901' => 'cav', 'Haze_14426' => 'cav', 'Hma1.2p1_0060F.1_g033030' => 'hma', 'Hma1.2p1_0060F.1_g033040' => 'hma', 'HPP92_000937' => 'vpl', 'HPP92_009945' => 'vpl', 'HPP92_014049' => 'vpl', 'HPP92_019469' => 'vpl', 'HPP92_023635' => 'vpl', 'Hund02578' => 'sun', 'Hund02579' => 'sun', 'Hund05551' => 'sun', 'Hund05582' => 'sun', 'Hund13141' => 'sun', 'Hund25172' => 'sun', 'Lalb_Chr07g0178321' => 'lal', 'Lalb_Chr10g0092861' => 'lal', 'Lalb_Chr10g0098911' => 'lal', 'Lalb_Chr12g0197231' => 'lal', 'Lalb_Chr12g0209841' => 'lal', 'Lalb_Chr13g0302821' => 'lal', 'Lalb_Chr17g0341231' => 'lal', 'Lj1g0007173' => 'lja', 'Lj1g0007563' => 'lja', 'Lj1g0023565' => 'lja', 'Lj2A1125T48' => 'lonja', 'Lj2g0014917' => 'lja', 'Lj3A1029T40' => 'lonja', 'Lj3g0014267' => 'lja', 'Lj4A119G47' => 'lonja', 'Lj4g0013109' => 'lja', 'Lj4g0026500' => 'lja', 'Lj5C102G6' => 'lonja', 'Lj6A778T62' => 'lonja', 'Lsat_1_v5_gn_2_74281' => 'lsa', 'Lsat_1_v5_gn_3_53901' => 'lsa', 'Lsat_1_v5_gn_3_97601' => 'lsa', 'Lsat_1_v5_gn_4_11900' => 'lsa', 'Lsat_1_v5_gn_4_171761' => 'lsa', 'Lsat_1_v5_gn_5_22440' => 'lsa', 'Lsat_1_v5_gn_8_115941' => 'lsa', 'Lsat_1_v5_gn_9_14880' => 'lsa', 'Manes.01G027200' => 'mes', 'Manes.02G055400' => 'mes', 'Manes.05G110000' => 'mes', 'Manes.06G084000' => 'mes', 'Manes.06G084100' => 'mes', 'Manes.12G048000' => 'mes', 'Manes.14G086100' => 'mes', 'Manes.14G086200' => 'mes', 'Mapoly0019s0036' => 'mpo', 'MBI07_g27651_MAGBIO' => 'mbi', 'MBI07_g46756_MAGBIO' => 'mbi', 'MBI11_g07411_MAGBIO' => 'mbi', 'MBI19_g29612_MAGBIO' => 'mbi', 'MBI19_g36959_MAGBIO' => 'mbi', 'MD05G1170300' => 'mdo', 'MD06G1225600' => 'mdo', 'MD09G1067200' => 'mdo', 'MD10G1158500' => 'mdo', 'MD13G1061900' => 'mdo', 'MD14G1212500' => 'mdo', 'MD16G1060400' => 'mdo', 'MD17G1060200' => 'mdo', 'Medtr3g025970' => 'mtr', 'Medtr4g109600' => 'mtr', 'Medtr5g045370' => 'mtr', 'Medtr7g013820' => 'mtr', 'Medtr8g012620' => 'mtr', 'MELO3C002033.2' => 'cme', 'MELO3C002034.2' => 'cme', 'MELO3C012155.2' => 'cme', 'MELO3C022721.2' => 'cme', 'Migut.H00620' => 'egut', 'Migut.K01272' => 'egut', 'Migut.L01185' => 'egut', 'Migut.N00636' => 'egut', 'Migut.N00800' => 'egut', 'MSTRG.11336' => 'ama', 'MSTRG.12769' => 'ama', 'MSTRG.13450' => 'ama', 'MSTRG.15449' => 'ama', 'MSTRG.17990' => 'ama', 'MSTRG.23882' => 'ama', 'MSTRG.3357' => 'ama', 'MSTRG.756' => 'ama', 'MSTRG.7743' => 'ama', 'Nitab4.5_0000014g0440' => 'nta', 'Nitab4.5_0000212g0250' => 'nta', 'Nitab4.5_0000231g0240' => 'nta', 'Nitab4.5_0001328g0050' => 'nta', 'Nitab4.5_0002957g0010' => 'nta', 'Nitab4.5_0003020g0150' => 'nta', 'Nitab4.5_0003583g0030' => 'nta', 'Nitab4.5_0005072g0020' => 'nta', 'Nitab4.5_0007019g0010' => 'nta', 'Nitab4.5_0007229g0010' => 'nta', 'Nitab4.5_0009076g0010' => 'nta', 'Nitab4.5_0009585g0020' => 'nta', 'Nitab4.5_0013333g0010' => 'nta', 'Nitab4.5_0013813g0010' => 'nta', 'Nn1g05763' => 'nnu', 'Nn3g17460' => 'nnu', 'Nn3g17461' => 'nnu', 'Nn3g20054' => 'nnu', 'Nn4g23438' => 'nnu', 'Nn4g23439' => 'nnu', 'Oeu004589.1' => 'oeu', 'Oeu014414.1' => 'oeu', 'Oeu025285.1' => 'oeu', 'Oeu033397.2' => 'oeu', 'Oeu042871.1' => 'oeu', 'Oeu048138.1' => 'oeu', 'Oeu051022.1' => 'oeu', 'Oeu055084.1' => 'oeu', 'Oeu056386.1' => 'oeu', 'Oeu057859.1' => 'oeu', 'Oeu062478.1' => 'oeu', 'Os01g0763600' => 'osa', 'Os03g0214200' => 'osa', 'Os03g0419100' => 'osa', 'Os03g0603600' => 'osa', 'Os07g0602800' => 'osa', 'Os07g0602900' => 'osa', 'Peaxi162Scf00013g00645' => 'pax', 'Peaxi162Scf00166g00411' => 'pax', 'Peaxi162Scf00175g00218' => 'pax', 'Peaxi162Scf00667g00615' => 'pax', 'Peaxi162Scf00991g00212' => 'pax', 'Peaxi162Scf01228g00005' => 'pax', 'Peaxi162Scf01312g00016' => 'pax', 'PGR004G2502' => 'pgr', 'PGR083G0437' => 'pgr', 'PGR083G1986' => 'pgr', 'PGR083G2152' => 'pgr', 'PGR119G0085' => 'pgr', 'PGR119G0875' => 'pgr', 'PGSC0003DMG400001460' => 'stu', 'PGSC0003DMG400004067' => 'stu', 'PGSC0003DMG400014083' => 'stu', 'PGSC0003DMG400014084' => 'stu', 'PGSC0003DMG400020167' => 'stu', 'PGSC0003DMG400028315' => 'stu', 'PGSC0003DMG400039185' => 'stu', 'PGSC0003DMG400041161' => 'stu', 'PGSC0003DMG400044809' => 'stu', 'PGSC0003DMG401017804' => 'stu', 'Phvul.003G042000' => 'pvu', 'Phvul.003G184200' => 'pvu', 'Phvul.003G184300' => 'pvu', 'Phvul.008G032900' => 'pvu', 'Phvul.009G202000' => 'pvu', 'Phvul.010G022000' => 'pvu', 'Potri.004G120600' => 'ptr', 'Potri.008G096500' => 'ptr', 'Potri.010G157900' => 'ptr', 'Potri.015G058400' => 'ptr', 'Potri.017G094500' => 'ptr', 'Pp3c11_24160' => 'ppa', 'Prupe.1G288000' => 'ppe', 'Prupe.5G205800' => 'ppe', 'Prupe.5G205900' => 'ppe', 'Prupe.8G197500' => 'ppe', 'Psat2g131080' => 'psa', 'Psat3g201520' => 'psa', 'Psat4g047720' => 'psa', 'Psat4g203840' => 'psa', 'Psat5g203520' => 'psa', 'PSO017G0362' => 'pso', 'PSO017G5082' => 'pso', 'PSO017G5931' => 'pso', 'PSO063G3704' => 'pso', 'PSO371G0001' => 'pso', 'PSO478G3209' => 'pso', 'PSO675G9333' => 'pso', 'QL02p067550' => 'qlo', 'QL03p074059' => 'qlo', 'QL03p074063' => 'qlo', 'QL03p074068' => 'qlo', 'QL03p074386' => 'qlo', 'QL03p074391' => 'qlo', 'QL03p074394' => 'qlo', 'QL05p066163' => 'qlo', 'QL05p080532' => 'qlo', 'QL10p019706' => 'qlo', 'QL10p019730' => 'qlo', 'QL10p019748' => 'qlo', 'RcHm_v2.0_Chr2g0165801' => 'rch', 'RcHm_v2.0_Chr4g0395211' => 'rch', 'RcHm_v2.0_Chr4g0438171' => 'rch', 'RcHm_v2.0_Chr6g0283921' => 'rch', 'RcHm_v2.0_Chr7g0183171' => 'rch', 'RcHm_v2.0_Chr7g0183181' => 'rch', 'Rhsim01G0251800' => 'rsi', 'Rhsim01G0251900' => 'rsi', 'Rhsim01G0252200' => 'rsi', 'Rhsim08G0145000' => 'rsi', 'Rhsim08G0145400' => 'rsi', 'Rhsim09G0126900' => 'rsi', 'Rhsim10G0049900' => 'rsi', 'Rhsim11G0112200' => 'rsi', 'Rhsim11G0112600' => 'rsi', 'Rhsim12G0148700' => 'rsi', 'RhsimUnG0107900' => 'rsi', 'RhsimUnG0108000' => 'rsi', 'RhsimUnG0108100' => 'rsi', 'RhsimUnG0108200' => 'rsi', 'Sabra08G0072800' => 'sbr', 'Sabra10G0119700' => 'sbr', 'Sabra10G0119800' => 'sbr', 'Sabra15G0084000' => 'sbr', 'Sabra17G0083300' => 'sbr', 'SalBow1G3091' => 'sbo', 'SalBow1G5841' => 'sbo', 'SalBow1G7311' => 'sbo', 'SalBow1G7626' => 'sbo', 'SalBow2G3341' => 'sbo', 'SalBow3G1197' => 'sbo', 'SalBow5G2710' => 'sbo', 'SalBow6G0470' => 'sbo', 'SalBow6G2840' => 'sbo', 'Sc04g0004370' => 'sci', 'Sc04g0007540' => 'sci', 'Sc05g0001920' => 'sci', 'Sc14g0006340' => 'sci', 'Sc24g0003460' => 'sci', 'Sc24g0003470' => 'sci', 'Sed0001151' => 'sed', 'Sed0003610' => 'sed', 'Sed0005447' => 'sed', 'Sed0008931' => 'sed', 'Sed0010778' => 'sed', 'Sed0016913' => 'sed', 'Sed0023797' => 'sed', 'SEGI_06758' => 'sgi', 'SEGI_18270' => 'sgi', 'SEGI_37523' => 'sgi', 'SGA_v2.0_scaffold25G10954' => 'sas', 'SGA_v2.0_scaffold28G11744' => 'sas', 'SGA_v2.0_scaffold4G02393' => 'sas', 'SGA_v2.0_scaffold52G19137' => 'sas', 'SHI16141' => 'shi', 'SHI27088' => 'shi', 'SMO307G0036' => 'smo', 'SMO347G0630' => 'smo', 'SMO348G0087' => 'smo', 'SMO351G0244' => 'smo', 'SMO356G0402' => 'smo', 'Solyc01g058740.2' => 'sly', 'Solyc02g030600.2' => 'sly', 'Solyc02g030610.3' => 'sly', 'Solyc02g030620.1' => 'sly', 'Solyc02g030625.1' => 'sly', 'Solyc02g030630.2' => 'sly', 'Solyc02g030633.1' => 'sly', 'Solyc02g030637.1' => 'sly', 'Solyc02g030640.2' => 'sly', 'Solyc02g030650.1' => 'sly', 'Solyc02g032140.3' => 'sly', 'Solyc02g032670.1' => 'sly', 'Solyc02g032680.2' => 'sly', 'Solyc02g032690.1' => 'sly', 'Solyc02g032695.1' => 'sly', 'Solyc02g032720.3' => 'sly', 'Solyc02g033020.1' => 'sly', 'Solyc02g066840.2' => 'sly', 'Solyc02g066850.1' => 'sly', 'Solyc02g066855.1' => 'sly', 'Solyc02g066857.1' => 'sly', 'Solyc02g066880.2' => 'sly', 'Solyc02g066890.2' => 'sly', 'Solyc02g066900.3' => 'sly', 'Solyc02g066905.1' => 'sly', 'Solyc02g088910.3' => 'sly', 'Solyc02g150115.1' => 'sly', 'Solyc04g005380.3' => 'sly', 'Solyc05g012210.4' => 'sly', 'Solyc06g069470.3' => 'sly', 'Solyc06g083290.1' => 'sly', 'Sopen00g007860' => 'spe', 'Sopen02g011000' => 'spe', 'Sopen02g011030' => 'spe', 'Sopen02g011040' => 'spe', 'Sopen02g011240' => 'spe', 'Sopen02g016080' => 'spe', 'Sopen02g016090' => 'spe', 'Sopen02g033600' => 'spe', 'Sopen04g001370' => 'spe', 'Sopen05g007040' => 'spe', 'Sopen05g007850' => 'spe', 'Sopen06g026760' => 'spe', 'Sopen06g034670' => 'spe', 'Sp1g12180' => 'spa', 'Sp2g18010' => 'spa', 'Sp3g01210' => 'spa', 'Sp3g06190' => 'spa', 'Sp5g24320' => 'spa', 'Sp5g29390' => 'spa', 'Sp6g34910' => 'spa', 'TAR362G1251' => 'tar', 'TAR371G0632' => 'tar', 'TAR374G0104' => 'tar', 'TAR374G1165' => 'tar', 'TAR622G1281' => 'tar', 'TAR629G2686' => 'tar', 'THA.LOC104800367' => 'tha', 'THA.LOC104805199' => 'tha', 'THA.LOC104805513' => 'tha', 'THA.LOC104812108' => 'tha', 'THA.LOC104818348' => 'tha', 'THA.LOC104818976' => 'tha', 'THA.LOC104820994' => 'tha', 'THA.LOC104821198' => 'tha', 'Thecc.01G218800' => 'tca', 'Thecc.02G329700' => 'tca', 'Thecc.02G329800' => 'tca', 'Thecc.03G102600' => 'tca', 'Thecc.03G102800' => 'tca', 'Thecc.04G096200' => 'tca', 'Thhalv10004771m.g' => 'esa', 'Thhalv10008099m.g' => 'esa', 'Thhalv10013858m.g' => 'esa', 'Thhalv10018684m.g' => 'esa', 'Thhalv10018761m.g' => 'esa', 'Thhalv10021165m.g' => 'esa', 'Thhalv10022028m.g' => 'esa', 'TPR.G12243' => 'tpr', 'TPR.G2011' => 'tpr', 'TPR.G24460' => 'tpr', 'TPR.G25562' => 'tpr', 'TPR.G28202' => 'tpr', 'TWI15G0383' => 'twi', 'TWI15G0810' => 'twi', 'TWI18G0774' => 'twi', 'TWI31G0936' => 'twi', 'TWI32G0800' => 'twi', 'TWI36G0842' => 'twi', 'TWI60G1025' => 'twi', 'TWI60G1265' => 'twi', 'TWI75G0079' => 'twi', 'unitig_26.g10287' => 'ugi', 'unitig_37.g12883' => 'ugi', 'unitig_46.g18242' => 'ugi', 'unitig_52.g17638' => 'ugi', 'unitig_736.g22274' => 'ugi', 'unitig_749.g13430' => 'ugi', 'unitig_899.g15100' => 'ugi', 'vmacro05639' => 'vma', 'vmacro10429' => 'vma', 'vmacro14728' => 'vma', 'vmacro16492' => 'vma', 'vmacro17613' => 'vma', 'VMungo0331G0432' => 'vmu', 'VMungo1215G1899' => 'vmu', 'VMungo1215G1970' => 'vmu', 'VMungo1215G3378' => 'vmu', 'VMungo1309G0988' => 'vmu', 'VMungo1383G2800' => 'vmu', 'Zm00001eb020120' => 'zma', 'Zm00001eb050070' => 'zma', 'Zm00001eb326890' => 'zma', 'Zm00001eb326900' => 'zma', 'Zm00001eb370370' => 'zma', 'Zm00001eb393150' => 'zma', 'Zm00001eb400170' => 'zma' ) $gf_id = 'HOM05D000813' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000813' ) $data_identifier = 'HOM05D000813' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 5, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 31, 'spe' => (int) 13, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400170' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1